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Multiple Sequence Alignment
Multiple Sequence Alignment
Select Proteins
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Spike glycoprotein
A0A023Y9K3 (BtVs-BetaCoV/SC2013)
A0A088DJY6 (Bat Hp-betacoronavirus/Zhejiang2013)
A0A088DJY6 (Bat Hp-betacoronavirus/Zhejiang2013)
A0A0A7UZR7 (Betacoronavirus HKU24)
A0A0K1Z074 (Bat SARS-like coronavirus YNLF_31C)
A0A0K2RVL1 (Equine coronavirus)
A0A0U1UYX4 (BtRf-BetaCoV/JL2012)
A0A0U1UYX4 (BtRf-BetaCoV/JL2012)
A3EX94 (Bat coronavirus HKU4 )
A3EXA3 (Bat coronavirus HKU4-2)
A3EXC1 (Bat coronavirus HKU4-4)
A3EXD0 (Bat coronavirus HKU5)
A3EXF7 (Bat coronavirus HKU5-5)
A3EXG6 (Bat coronavirus HKU9 )
A3EXJ0 (Bat coronavirus HKU9-4)
C6GHS2 (Rat coronavirus Parker)
D2E1D2 (SARS coronavirus ExoN1)
D2E1E7 (SARS coronavirus wtic-MB)
K9N5Q8 (Middle East respiratory syndrome-related coronavirus)
P11224 (Murine coronavirus)
P11225 (Murine coronavirus)
P15777 (Bovine coronavirus)
P22432 (Murine coronavirus)
P25190 (Bovine coronavirus )
P25191 (Bovine coronavirus )
P25192 (Bovine coronavirus )
P25193 (Bovine coronavirus)
P25194 (Bovine coronavirus )
P36334 (Human coronavirus OC43)
P59594 (Human SARS coronavirus)
Q02385 (Murine coronavirus)
Q0Q475 (Bat coronavirus 279/2005)
Q0Q4F2 (Bat coronavirus 133/2005)
Q0QDX9 (Bat SARS CoV Rm1/2004)
Q0ZME7 (Human coronavirus HKU1)
Q14EB0 (Human coronavirus HKU1)
Q19U37 (Human coronavirus HKU1)
Q3I5J5 (Bat coronavirus Rp3/2004)
Q3LZX1 (Bat coronavirus HKU3)
Q5MQD0 (Human coronavirus HKU1)
Q8V436 (Bovine coronavirus )
Q91A26 (Bovine coronavirus )
Q9IKD1 (Rat coronavirus)
Q9QAQ8 (Bovine coronavirus )
Q9QAR5 (Bovine coronavirus )
R9QTA0 (Bat coronavirus Rp/Shaanxi2011)
R9UQ53 (Middle East respiratory syndrome-related coronavirus)
Envelope small membrane protein
A0A023Y9K8 (BtVs-BetaCoV/SC2013)
A0A0A7UXR5 (Betacoronavirus HKU24)
A0A0K1Z029 (Bat SARS-like coronavirus YNLF_31C)
A0A0U1WJX3 (BtRf-BetaCoV/JL2012)
A3EX99 (Bat coronavirus HKU4)
A3EXA8 (Bat coronavirus HKU4-2)
A3EXC6 (Bat coronavirus HKU4-4)
A3EXD5 (Bat coronavirus HKU5 (BtCoV) (BtCoV/HKU5/2004))
A3EXG2 (Bat coronavirus HKU5-5)
A8R4D4 (Equine coronavirus)
C6GHS4 (Rat coronavirus Parker)
D2E1D5 (SARS coronavirus ExoN1)
D2E1F0 (SARS coronavirus wtic-MB)
K9N5R3 (Middle East respiratory syndrome-related coronavirus)
P06591 (Murine coronavirus )
P0C2Q1 (Bovine coronavirus)
P0C2Q2 (Bovine coronavirus)
P0C2Q3 (Bovine coronavirus)
P0C2Q4 (Bovine coronavirus)
P0C2Q5 (Bovine coronavirus )
P0C2Q6 (Bovine coronavirus )
P0C2Q7 (Bovine coronavirus)
P0C2R0 (Murine coronavirus )
P15775 (Bovine coronavirus)
P15779 (Bovine coronavirus )
P29076 (Murine coronavirus )
P59637 (Human SARS coronavirus )
Q04854 (Human coronavirus OC43)
Q0Q473 (Bat coronavirus 279/2005)
Q0Q4E8 (Bat coronavirus 133/2005 (BtCoV) (BtCoV/133/2005))
Q0QDX7 (Bat SARS CoV Rm1/2004)
Q0ZJ83 (Human coronavirus HKU1)
Q0ZME5 (Human coronavirus HKU1 (isolate N5) (HCoV-HKU1))
Q14EA8 (Human coronavirus HKU1 (isolate N2) (HCoV-HKU1))
Q3I5J3 (Bat coronavirus Rp3/2004 )
Q3LZW9 (Bat coronavirus HKU3)
Q5MQC8 (Human coronavirus HKU1)
Q9IKC8 (Rat coronavirus)
R9QTJ1 (Bat coronavirus Rp/Shaanxi2011)
R9UQN1 (Middle East respiratory syndrome-related coronavirus)
U5LNK7 (Betacoronavirus Erinaceus/VMC/DEU/2012)
Membrane protein
A0A023Y9W0 (BtVs-BetaCoV/SC2013)
A0A088DIE6 (Bat Hp-betacoronavirus/Zhejiang2013)
A0A0A7V404 (Betacoronavirus HKU24)
A0A0K1YZZ2 (Bat SARS-like coronavirus YNLF_31C)
A0A0K2RVN4 (Equine coronavirus)
A0A0U1UZ41 (BtRf-BetaCoV/JL2012)
A0A1B3Q5W6 (Rousettus bat coronavirus)
A3EXA0 (Bat coronavirus HKU4 )
A3EXA9 (Bat coronavirus HKU4-2)
A3EXC7 (Bat coronavirus HKU4-4)
A3EXD6 (Bat coronavirus HKU5)
A3EXG3 (Bat coronavirus HKU5-5)
A3EXG9 (Bat coronavirus HKU9 )
A3EXJ3 (Bat coronavirus HKU9-4)
C6GHS5 (Rat coronavirus Parker)
D2E1D6 (SARS coronavirus ExoN1)
D2E1F1 (SARS coronavirus wtic-MB)
H9AA37 (Rabbit coronavirus HKU14)
K9N7A1 (Middle East respiratory syndrome-related coronavirus)
P03415 (Murine coronavirus )
P08549 (Murine coronavirus )
P59596 (Human SARS coronavirus )
P69599 (Bovine coronavirus )
P69600 (Bovine coronavirus )
P69703 (Bovine coronavirus)
P69704 (Bovine coronavirus )
P69705 (Bovine coronavirus )
Q01455 (Human coronavirus OC43 )
Q0Q472 (Bat coronavirus 279/2005 )
Q0Q4E7 (Bat coronavirus 133/2005 )
Q0QDX6 (Bat SARS CoV Rm1/2004)
Q0ZJ82 (Human coronavirus HKU1)
Q0ZME4 (Human coronavirus HKU1)
Q3I5J2 (Bat coronavirus Rp3/2004)
Q3LZX9 (Bat coronavirus HKU3 )
Q5MQC7 (Human coronavirus HKU1)
Q8V433 (Bovine coronavirus)
Q91A23 (Bovine coronavirus)
Q9IKC7 (Rat coronavirus)
Q9JEB4 (Murine coronavirus )
Q9QAR9 (Bovine coronavirus)
Q9WCD1 (Rat coronavirus)
R9QTR4 (Bat coronavirus Rp/Shaanxi2011)
R9UNX5 (Middle East respiratory syndrome-related coronavirus)
U5LNJ8 (Betacoronavirus Erinaceus/VMC/DEU/201)
Nucleoprotein
A0A023YAJ4 (BtVs-BetaCoV/SC2013)
A0A088DI26 (Bat Hp-betacoronavirus/Zhejiang2013)
A0A0A7UXF2 (Betacoronavirus HKU24)
A0A0K1YZZ7 (Bat SARS-like coronavirus YNLF_31C)
A0A0U1UZD6 (BtRf-BetaCoV/JL2012)
A0A1B3Q5X0 (Rousettus bat coronavirus)
A3EXA1 (Bat coronavirus HKU4)
A3EXB0 (Bat coronavirus HKU4-2)
A3EXC8 (Bat coronavirus HKU4-4)
A3EXD7 (Bat coronavirus HKU5 )
A3EXG4 (Bat coronavirus HKU5-5)
A3EXH0 (Bat coronavirus HKU9 )
A3EXJ4 (Bat coronavirus HKU9-4)
C6GHS6 (Rat coronavirus Parker)
D2E1E2 (SARS coronavirus ExoN1)
D2E1F7 (SARS coronavirus wtic-MB)
K9N4V7 (Middle East respiratory syndrome-related coronavirus)
P03416 (Murine coronavirus (strain A59))
P03417 (Murine coronavirus (strain JHM) )
P10527 (Bovine coronavirus (strain Mebus))
P18446 (Murine coronavirus)
P18447 (Murine coronavirus (strain 3))
P18448 (Murine coronavirus (strain S))
P19902 (Bovine coronavirus (strain F15))
P26020 (Bovine coronavirus (strain OK-0514))
P33469 (Human coronavirus OC43)
P59595 (Human SARS coronavirus (SARS-CoV) )
P59712 (Bovine coronavirus (strain Quebec))
Q02915 (Rat coronavirus (strain 681))
Q0Q468 (Bat coronavirus 279/2005)
Q0Q4E6 (Bat coronavirus 133/2005 )
Q0ZME3 (Human coronavirus HKU1 (isolate N5) )
Q14EA6 (Human coronavirus HKU1)
Q19U24 (Human coronavirus HKU1)
Q3I5I7 (Bat coronavirus Rp3/2004)
Q3I5K6 (Bat SARS CoV Rm1/2004)
Q3LZX4 (Bat coronavirus HKU3)
Q5MQC6 (Human coronavirus HKU1 (isolate N1))
Q83360 (Murine coronavirus (strain DVIM))
Q8V432 (Bovine coronavirus)
Q91A22 (Bovine coronavirus (strain 98TXSF-110-ENT))
Q9PY96 (Murine coronavirus (strain 2) )
Q9QAR1 (Bovine coronavirus)
Q9QAR8 (Bovine coronavirus (strain LY-138))
Q9WCD0 (Rat coronavirus (strain NJ))
R4WKE3 (Equine coronavirus)
R9QTB4 (Bat coronavirus Rp/Shaanxi2011)
T2BBK0 (Middle East respiratory syndrome-related coronavirus)
U5LQW6 (Betacoronavirus Erinaceus/VMC/DEU/2012)
Envelope protein
A0A088DKU1 (Bat Hp-betacoronavirus/Zhejiang2013)
Spike protein
A0A1B3Q5W5 (Rousettus bat coronavirus)
Spike glycoprotein
P0DTC2 (Severe acute respiratory syndrome coronavirus 2 )
Envelope small membrane protein
P0DTC4 (Severe acute respiratory syndrome coronavirus 2 )
Membrane protein
P0DTC5 (Severe acute respiratory syndrome coronavirus 2 )
Nucleoprotein
P0DTC9 (Severe acute respiratory syndrome coronavirus 2 )
Builds Multiple Sequence Alignment using MUSCLE
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Pearson/FASTA
PHYLIP-Sequential
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